Glyma18g52780 - SoyBase

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Report for Sequence Feature Glyma18g52780

Feature Type:	gene_model
Chromosome:	Gm18
Start:	61270805
stop:	61274605
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g52780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12110	AT	Annotation by Michelle Graham. TAIR10: actin-11 \| chr3:3858116-3859609 FORWARD LENGTH=377	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0030036	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0005200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0676	KOG	Actin and related proteins	JGI		ISS
PTHR11937	Panther	ACTIN	JGI		ISS
PTHR11937:SF77	Panther	ACTIN	JGI		ISS
PF00022	PFAM	Actin	JGI		ISS
UniRef100_G7L017	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Actin n=2 Tax=Medicago truncatula RepID=G7L017_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N570	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N570_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g52780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g52780

Paralog	Evidence	Comments
Glyma02g10170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g52780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g290800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g52780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g52780

Limit To All Plant Sequences

>Glyma18g52780.1   sequence type=CDS   gene model=Glyma18g52780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGGCTGGTTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAGTCTAAGAGGGGTATTTTGACTCTCAAGTACCCCATTGAACACGGAATTGTGAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCATCCAGTTCTCTTAACTGAGGCCCCTCTTAACCCTAAGGCTAATCGTGAGAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCTATGTATGTAGCCATCCAGGCTGTTCTTTCACTTTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGTGACCTCACAGATTTCTTGATGAAAATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTAAGGGATGTGAAAGAAAAGCTTTCTTACATTGCCCTTGACTACGAGCAAGAACTGGAGACAGCCAGGACCAGCTCGTCTGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACCATTGGCGATGAGCGTTTCAGATGTCCAGAGGTTCTGTTCCAACCATCCATGATTGGAATGGAAGCTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTTGATATCAGGAAGGACCTCTATGGTAACATTGTTCTTTCAGGAGGAACAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATTTCGGCATTGGCACCCAGCAGCATGAAGATCAAGGTTGTAGCACCACCGGAGAGAAAATACAGTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGACGAGTCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAA

Predicted protein sequences of Glyma18g52780

Limit To All Plant Sequences

>Glyma18g52780.1   sequence type=predicted peptide   gene model=Glyma18g52780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

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